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Genome wide analysis of A. niger metabolism during industrial fed-batch fermentations Pedersen, Lasse ; Hansen, Kim ; Nielsen, Kristian Fog ; Nielsen, Jens ; Thykær, Jette Type: Poster - Poster Presented at: SBE’s 2nd International Conference on Biomolecular Engineering, Santa Barbara, Californien	2009
Exploring abiotic stress on asynchronous protein metabolism in single kernels of wheat studied by NMR spectroscopy and chemometrics Winning, H. ; Viereck, N. ; Wollenweber, B. ; Larsen, F.H. ; Jacobsen, Susanne ; Søndergaard, Ib ; Engelsen, S.B. in journal: Journal of Experimental Botany (ISSN: 0022-0957) (DOI: http://dx.doi.org/10.1093/jxb/ern293), vol: 60, issue: 1, pages: 291-300, 2009 Type: Journal article - Journal article DOI: 10.1093/jxb/ern293	2009
Effect of competition on the production and activity of secondary metabolites in Aspergillus species Losada, L. ; Ajayi, O. ; Frisvad, Jens Christian ; Yu, J. J. ; Nierman, W. C. in journal: Medical Mycology (ISSN: 1369-3786) (DOI: http://dx.doi.org/10.1080/13693780802409542), vol: 47, pages: S88-S96, 2009 Type: Journal article - Journal article DOI: 10.1080/13693780802409542	2009
Identification, pathogenicity and distribution of Penicillium spp. isolated from garlic in two regions in Argentina Valdez, Jorge G. ; Makuch, M. A. ; Ordovini, A. F. ; Frisvad, Jens Christian ; Overy, David Patrick ; Masuelli, R. W. ; Piccolo, R. J. in journal: Plant Pathology (ISSN: 0032-0862) (DOI: http://dx.doi.org/10.1111/j.1365-3059.2008.01960.x), vol: 58, issue: 2, pages: 352-361, 2009 Type: Journal article - Journal article DOI: 10.1111/j.1365-3059.2008.01960.x	2009
In Silico Genome-Scale Reconstruction and Validation of the Corynebacterium glutamicum Metabolic Network Kjeldsen, Kjeld Raunkjær ; Nielsen, J. in journal: Biotechnology and Bioengineering (Print) (ISSN: 0006-3592) (DOI: http://dx.doi.org/10.1002/bit.22067), vol: 102, issue: 2, pages: 583-597, 2009 Type: Journal article - Journal article DOI: 10.1002/bit.22067	2009
Linking high-resolution metabolic flux phenotypes and transcriptional regulation in yeast modulated by the global regulator Gcn4p Moxley, Joel F. ; Jewett, Michael Christopher ; Antoniewicz, Maciek R. ; Villas-Boas, Silas G. ; Alper, Hal ; Wheeler, Robert T. ; Tong, Lily ; Hinnebusch, Alan G. ; Ideker, Trey ; Nielsen, Jens ; Stephanopoulos, Gregory in journal: Proceedings of the National Academy of Science of the United States of America (ISSN: 0027-8424) (DOI: http://dx.doi.org/10.1073/pnas.0811091106), vol: 106, issue: 16, pages: 6477-6482, 2009 Type: Journal article - Journal article DOI: 10.1073/pnas.0811091106	2009
Essential pathway identification: from in silico analysis to potential antifungal targets in Aspergillus fumigatus Thykær, Jette ; Andersen, Mikael Rørdam ; Baker, S. E. in journal: Medical Mycology (ISSN: 1369-3786) (DOI: http://dx.doi.org/10.1080/13693780802455305), vol: 47, issue: Suppl. 1, pages: S80-S87, 2009 Type: Journal article - Journal article DOI: 10.1080/13693780802455305	2009
Overexpression of a novel endogenous NADH kinase in Aspergillus nidulans enhances growth Panagiotou, Gianni ; Grotkjær, Thomas ; Hofmann, Gerald ; Bapat, Prashant Madhusudhan ; Olsson, Lisbeth in journal: Metabolic Engineering (ISSN: 1096-7176) (DOI: http://dx.doi.org/10.1016/j.ymben.2008.08.008), vol: 11, issue: 1, pages: 31-39, 2009 Type: Journal article - Journal article DOI: 10.1016/j.ymben.2008.08.008	2009
Potato carrot agar with manganese as an isolation medium for Alternaria, Epicoccum and Phoma Sørensen, Jens Laurids ; Mogensen, Jesper Mølgaard ; Thrane, Ulf ; Andersen, Birgitte in journal: International Journal of Food Microbiology (ISSN: 0168-1605) (DOI: http://dx.doi.org/10.1016/j.ijfoodmicro.2008.12.029), vol: 130, issue: 1, pages: 22-26, 2009 Type: Journal article - Journal article DOI: 10.1016/j.ijfoodmicro.2008.12.029	2009
Recombinant bacterial hemoglobin alters metabolism of Aspergillus niger Hofmann, Gerald ; Diano, Audrey ; Nielsen, Jens in journal: Metabolic Engineering (ISSN: 1096-7176) (DOI: http://dx.doi.org/10.1016/j.ymben.2008.07.002), vol: 11, issue: 1, pages: 8-12, 2009 Type: Journal article - Journal article DOI: 10.1016/j.ymben.2008.07.002	2009
Analyse af NIR data fra Streptomyces coelicolor fermenteringer Petersen, Nanna ; Gernaey, Krist ; Cervera Padrell, Albert Emili ; Eliasson Lantz, Anna ; Ödman, Peter ; Stocks, Stuart Type: Conference abstract for conference - Conference abstract for conference Presented at: Den første danske kemometri-konference	2009
Development of continuous culture microbioreactors Schäpper, Daniel ; Fernandes, R L ; Gernaey, Krist ; Eliasson Lantz, Anna ; Stocks, Stuart ; Szita, Nicolas Type: Conference abstract for conference - Conference abstract for conference Presented at: 10th International Conference on Microreaction Technology, New Orleans, LA	2009
Controlled indole-3-acetaldoxime production through ethanol-induced expression of CYP79B2 Mikkelsen, M.D. ; Fuller, V.L. ; Hansen, Bjarne Gram ; Nafisi, M. ; Olsen, C.E. ; Nielsen, Henrik Bjørn ; Halkier, B.A. in journal: Planta (ISSN: 0032-0935) (DOI: http://dx.doi.org/10.1007/s00425-009-0907-5), vol: 229, issue: 6, pages: 1209-1217, 2009 Type: Journal article - Journal article DOI: 10.1007/s00425-009-0907-5	2009
Current status of systems biology in Aspergilli Andersen, Mikael Rørdam ; Nielsen, Jens in journal: Fungal Genetics and Biology (ISSN: 1087-1845) (DOI: http://dx.doi.org/10.1016/j.fgb.2008.07.006), vol: 46, issue: 1, pages: 180-190, 2009 Type: Journal article - Journal article DOI: 10.1016/j.fgb.2008.07.006	2009
Sensitivity analysis of non-linear dynamic models: Prioritizing experimental research Sin, Gürkan ; Eliasson Lantz, Anna ; Gernaey, Krist Type: Sound/Visual production (digital) - Sound/Visual production (digital) Presented at: 10th International Symposium on Process System Engineering, Salvador de Bahia	2009
Targeted sulphur and selenium speciation in yeast by parallel elemental and molecular mass spectrometry Hillestrøm, Peter René ; Mapelli, Valeria ; Olsson, Lisbeth ; Larsen, Erik Huusfeldt Type: Poster - Poster Presented at: 2009 European Winter Conference on Plasma Spectrochemistry, Graz	2009
Aspergillus acidus from Puerh tea and black tea does not produce ochratoxin A and fumonisin B-2 Mogensen, Jesper Mølgaard ; Varga, J. ; Thrane, Ulf ; Frisvad, Jens Christian in journal: International Journal of Food Microbiology (ISSN: 0168-1605) (DOI: http://dx.doi.org/10.1016/j.ijfoodmicro.2009.04.011), vol: 132, issue: 2-3, pages: 141-144, 2009 Type: Journal article - Journal article DOI: 10.1016/j.ijfoodmicro.2009.04.011	2009
Aspergillus alabamensis, a New Clinically Relevant Species in the Section Terrei Balajee, S. A. ; Baddley, J. W. ; Peterson, S. W. ; Nickle, D. ; Varga, J. ; Boey, A. ; Lass-Florl, C. ; Frisvad, Jens Christian ; Samson, R. A. in journal: Eukaryotic Cell (Online Edition) (ISSN: 1535-9786) (DOI: http://dx.doi.org/10.1128/EC.00272-08), vol: 8, issue: 5, pages: 713-722, 2009 Type: Journal article - Journal article DOI: 10.1128/EC.00272-08	2009
In vitro activities of eight antifungal drugs against 70 clinical and environmental isolates of Alternaria species Badali, H. ; De Hoog, G. S. ; Curfs-Breuker, I. ; Andersen, Birgitte ; Meis, J. F. in journal: Journal of Antimicrobial Chemotherapy (ISSN: 0305-7453) (DOI: http://dx.doi.org/10.1093/jac/dkp109), vol: 63, issue: 6, pages: 1295-1297, 2009 Type: Journal article - Journal article DOI: 10.1093/jac/dkp109	2009
Inactivation of the rhlA gene in Pseudomonas aeruginosa prevents rhamnolipid production, disabling the protection against polymorphonuclear leukocytes van Gennip, Maria ; Christensen, Louise Dahl ; Alhede, Morten ; Phipps, Richard Kerry ; Jensen, P. O. ; Christophersen, L. ; Pamp, Sünje Johanna ; Moser, C. ; Mikkelsen, Per Jensen ; Koh, A.Y. ; Tolker-Nielsen, Tim ; Pier, G. B. ; Hoiby, N. ; Givskov, Michael Christian ; Bjarnsholt, Thomas in journal: Acta Pathologica Microbiologica et Immunologica Scandinavica (ISSN: 0903-4641) (DOI: http://dx.doi.org/10.1111/j.1600-0463.2009.02466.x), vol: 117, issue: 7, pages: 537-546, 2009 Type: Journal article - Journal article DOI: 10.1111/j.1600-0463.2009.02466.x	2009
Polyphasic taxonomy of the heat resistant ascomycete genus Byssochlamys and its Paecilomyces anamorphs Samson, R.A. ; Houbraken, J. ; Varga, J. ; Frisvad, Jens Christian in journal: Persoonia (ISSN: 0031-5850) (DOI: http://dx.doi.org/10.3767/003158509X418925), vol: 22, pages: 14-27, 2009 Type: Journal article - Journal article DOI: 10.3767/003158509X418925	2009
Secondary metabolites from Eurotium species, Aspergillus calidoustus and A. insuetus common in Canadian homes with a review of their chemistry and biological activities Slack, G. J. ; Puniani, E. ; Frisvad, Jens Christian ; Samson, R. A. ; Miller, J. D. in journal: Mycological Research (ISSN: 0953-7562) (DOI: http://dx.doi.org/10.1016/j.mycres.2008.12.002), vol: 113, issue: 4, pages: 480-490, 2009 Type: Journal article - Journal article DOI: 10.1016/j.mycres.2008.12.002	2009
The 2008 update of the Aspergillus nidulans genome annotation: A community effort Wortman, Jennifer Russo ; Gilsenan, Jane Mabey ; Joardar, Vinita ; Deegan, Jennifer ; Clutterbuck, John ; Andersen, Mikael Rørdam ; Archer, David ; Bencina, Mojca ; Braus, Gerhard ; Coutinho, Pedro ; von Döhren, Hans ; Doonan, John ; Driessen, Arnold J.M. ; Durek, Pawel ; Espeso, Eduardo ; Fekete, Erzsébet ; Flipphi, Michel ; Estrada, Carlos Garcia ; Geysens, Steven ; Goldman, Gustavo ; de Groot, Piet W.J. ; Hansen, Kim ; Harris, Steven D. ; Heinekamp, Thorsten ; Helmstaedt, Kerstin ; Henrissat, Bernard ; Hofmann, Gerald ; Homan, Tim ; Horio, Tetsuya ; Horiuchi, Hiroyuki ; James, Steve ; Jones, Meriel ; Karaffa, Levente ; Karányi, Zsolt ; Kato, Masashi ; Keller, Nancy ; Kelly, Diane E. ; Kiel, Jan A.K.W. ; Kim, Jung-Mi ; van der Klei, Ida J. ; Klis, Frans M. ; Kovalchuk, Andriy ; Kraševec, Nada ; Kubicek, Christian P. ; Liu, Bo ; MacCabe, Andrew ; Meyer, Vera ; Mirabito, Pete ; Miskei, Márton ; Mos, Magdalena ; Mullins, Jonathan ; Nelson, David R. ; Nielsen, Jens ; Oakley, Berl R. ; Osmani, Stephen A. ; Pakula, Tiina ; Paszewski, Andrzej ; Paulsen, Ian ; Pilsyk, Sebastian ; Pócsi, István ; Punt, Peter J. ; Ram, Arthur F.J. ; Ren, Qinghu ; Robellet, Xavier ; Robson, Geoff ; Seiboth, Bernhard ; van Solingen, Piet ; Specht, Thomas ; Sun, Jibin ; Taheri-Talesh, Naimeh ; Takeshita, Norio ; Ussery, David ; vanKuyk, Patricia A. ; Visser, Hans ; van de Vondervoort, Peter J.I. ; de Vries, Ronald P. ; Walton, Jonathan ; Xiang, Xin ; Xiong, Yi ; Ping Zeng, An ; Brandt, Bernd W. ; Cornell, Michael J. ; van den Hondel, Cees A.M.J.J. ; Visser, Jacob ; Oliver, Stephen G. ; Turner, Geoffrey in journal: Fungal Genetics and Biology (ISSN: 1087-1845) (DOI: http://dx.doi.org/10.1016/j.fgb.2008.12.003), vol: 46, issue: 1, pages: 2-13, 2009 Type: Journal article - Journal article DOI: 10.1016/j.fgb.2008.12.003	2009
Vibrio vulnificus produces quorum sensing signals of the AHL-class Valiente, E. ; Bruhn, Jesper Bartholin ; Nielsen, Kristian Fog ; Larsen, Jens Lauritz ; Roig, F. J. ; Gram, Lone ; Amaro, C. in journal: FEMS Microbiology Ecology (ISSN: 0168-6496) (DOI: http://dx.doi.org/10.1111/j.1574-6941.2009.00691.x), vol: 69, issue: 1, pages: 16-26, 2009 Type: Journal article - Journal article DOI: 10.1111/j.1574-6941.2009.00691.x	2009
Sensitivity Analysis of Non-Linear Dynamic Models: Prioritizing Experimental Research Sin, Gürkan ; Eliasson Lantz, Anna ; Gernaey, Krist part of: Proceedings of 10th International Symposium in Process Systems Engineering - PSE2009, pages: 267-272, 2009, Type: Article in proceedings - Article in proceedings Presented at: 10th International Symposium on Process System Engineering, Salvador de Bahia	2009
Analysis of Fusarium avenaceum Metabolites Produced during Wet Apple Core Rot Sørensen, Jens Laurids ; Phipps, Richard Kerry ; Nielsen, Kristian Fog ; Schroers, Hans-Josef ; Frank, Jana ; Thrane, Ulf in journal: Journal of Agricultural and Food Chemistry (ISSN: 0021-8561) (DOI: http://dx.doi.org/10.1021/jf802926u), vol: 57, issue: 4, pages: 1632-1639, 2009 Type: Journal article - Journal article DOI: 10.1021/jf802926u	2009
Fumonisin B2 production by Aspergillus niger in Thai coffee beans Noonim, P. ; Mahakarnchanaku, W. ; Nielsen, Kristian Fog ; Frisvad, Jens Christian ; Samson, R. A. in journal: Food Additives and Contaminants (ISSN: 0265-203X) (DOI: http://dx.doi.org/10.1080/02652030802366090), vol: 26, issue: 1, pages: 94-100, 2009 Type: Journal article - Journal article DOI: 10.1080/02652030802366090	2009
Post-genomic insights into the plant polysaccharide degradation potential of Aspergillus nidulans and comparison to Aspergillus niger and Aspergillus oryzae Coutinho, Pedro M. ; Andersen, Mikael Rørdam ; Kolenova, Katarina ; vanKuyk, Patricia A. ; Benoit, Isabelle ; Gruben, Birgit S. ; Trejo-Aguilar, Blanca ; Visser, Hans ; van Solingen, Piet ; Pakula, Tiina ; Seiboth, Bernard ; Battaglia, Evy ; Aguilar-Osorio, Guillermo ; de Jong, Jan F. ; Ohm, Robin A. ; Aguilar, Mariana ; Henrissat, Bernard ; Nielsen, Jens ; Stålbrand, Henrik ; de Vries, Ronald P. in journal: Fungal Genetics and Biology (ISSN: 1087-1845) (DOI: http://dx.doi.org/10.1016/j.fgb.2008.07.020), vol: 46, issue: Suppl. 1, pages: S161-S169, 2009 Type: Journal article - Journal article DOI: 10.1016/j.fgb.2008.07.020	2009
Studies of the Production of Fungal Polyketides in Aspergillus nidulans by Using Systems Biology Tools Panagiotou, Gianni ; Andersen, Mikael Rørdam ; Grotkjær, Thomas ; Regueira, Torsten Bak Høybye ; Nielsen, Jens ; Olsson, Lisbeth in journal: Applied and Environmental Microbiology (ISSN: 0099-2240) (DOI: http://dx.doi.org/10.1128/AEM.01461-08), vol: 75, issue: 7, pages: 2212-2220, 2009 Type: Journal article - Journal article DOI: 10.1128/AEM.01461-08	2009
Continuous culture microbioreactors Schäpper, Daniel ; Eliasson Lantz, Anna ; Stocks, S. ; Szita, Nicolas ; Gernaey, Krist Type: Sound/Visual production (digital) - Sound/Visual production (digital) Presented at: Society of General Microbiology Autumn 2009 Meeting, Heriot-Watt University, Edinburgh, Scotland, September 7-10	2009
Disposable continuous culture microbioreactor with yeast for screening and process development applications Eliasson Lantz, Anna ; Schäpper, Daniel ; Stocks, S. ; Szita, Nicolas ; Gernaey, Krist Type: Sound/Visual production (digital) - Sound/Visual production (digital) Presented at: Recent Advances in Fermentation Technology (RAFT VIII), San Diego, California, November 8-11, 2009	2009
Mechanistic models and advanced model analysis within a PAT framework Gernaey, Krist ; Woodley, John ; Eliasson Lantz, Anna ; Sin, Gürkan Type: Poster - Poster Presented at: 14th European Congress on Biotechnology, Barcelona	2009
Lægemiddelproduktion - brugen af modellering og PAT Gernaey, Krist ; Sin, Gürkan ; Eliasson Lantz, Anna ; Woodley, John ; Gani, Rafiqul ; Dam-Johansen, Kim in journal: Dansk Kemi (ISSN: 0011-6335), vol: 90, issue: 3, pages: 22-24, 2009 Type: Journal article - Journal article	2009
Application of microbioreactors in fermentation process development: a review Schäpper, Daniel ; Zainal Alam, Muhd Nazrul Hisham Bin ; Szita, Nicolas ; Eliasson Lantz, Anna ; Gernaey, Krist in journal: Analytical and Bioanalytical Chemistry (ISSN: 1618-2642) (DOI: http://dx.doi.org/10.1007/s00216-009-2955-x), vol: 395, issue: 3, pages: 679-695, 2009 Type: Journal article - Journal article DOI: 10.1007/s00216-009-2955-x	2009
Monitoring of S. coelicolor fermentations using in-situ NIR Petersen, Nanna ; Ödman, Peter ; Cervera Padrell, Albert Emili ; Eliasson Lantz, Anna ; Stocks, S. ; Gernaey, Krist Type: Poster - Poster Presented at: 14th European Congress on Biotechnology, Barcelona	2009
Applying spectroscopic methods and chemometrics to get a snap-shot of physiology in fermentation processes Eliasson Lantz, Anna ; Ödman, Peter ; Petersen, Nanna ; Olsson, Lisbeth ; Gernaey, Krist Type: Poster - Poster Presented at: Recent Advances in Fermentation Technology (RAFT VIII) : November 8-11, 2009, San Diego, California	2009
Indoor Environment and Children’s Health (IECH) – An ongoing epidemiological investigation on the association between indoor environmental factors in homes and kindergartens and children’s health and wellbeing Clausen, Geo ; Høst, Arne ; Toftum, Jørn ; Bekö, Gabriel ; Weschler, Charles J. ; Callesen, Michael ; Buhl, Susanne ; Ladegaard, Mette Bill ; Langer, Sarka ; Andersen, Birgitte ; Sundell, Jan ; Bornehag, Carl-Gustaf ; Sigsgaard, Torben part of: Proceedings of Healthy Buildings 2009, pages: 603, 2009, Syracuse Type: Article in proceedings - Article in proceedings Presented at: 9th International Healthy Building Conference and Exhibition 2009, Syracuse, NY	2009
Overexpression of isocitrate lyase-glyoxylate bypass influence on metabolism in Aspergillus niger Meijer, Susan Lisette ; Otero, José Manuel ; Olivares Hernandez, Roberto ; Andersen, Mikael Rørdam ; Olsson, Lisbeth ; Nielsen, Jens in journal: Metabolic Engineering (ISSN: 1096-7176) (DOI: http://dx.doi.org/10.1016/j.ymben.2008.12.002), vol: 11, issue: 2, pages: 107-116, 2009 Type: Journal article - Journal article DOI: 10.1016/j.ymben.2008.12.002	2009
Characterization of chromosomal integration sites for heterologous gene expression in Saccharomyces cerevisiae Flagfeldt, Dongmei Bai ; Siewers, Verena ; Huang, Le ; Nielsen, Jens in journal: Yeast (ISSN: 0749-503X) (DOI: http://dx.doi.org/10.1002/yea.1705), vol: 26, issue: 10, pages: 545-551, 2009 Type: Journal article - Journal article DOI: 10.1002/yea.1705	2009
Enhancing sesquiterpene production in Saccharomyces cerevisiae through in silico driven metabolic engineering Asadollahi, Mohammadali ; Maury, Jerome ; Patil, Kiran Raosaheb ; schalk, Michel ; Clark, Anthony ; Nielsen, Jens in journal: Metabolic Engineering (ISSN: 1096-7176) (DOI: http://dx.doi.org/10.1016/j.ymben.2009.07.001), vol: 11, issue: 6, pages: 328-334, 2009 Type: Journal article - Journal article DOI: 10.1016/j.ymben.2009.07.001	2009
Fingerprinting using extrolite profiles and physiological data shows sub-specific groupings of Penicillium crustosum strains Sonjak, Silva ; Frisvad, Jens Christian ; Gunde-Cimerman, Nina in journal: Mycological Research (ISSN: 0953-7562) (DOI: http://dx.doi.org/10.1016/j.mycres.2009.03.005), vol: 113, pages: 836-841, 2009 Type: Journal article - Journal article DOI: 10.1016/j.mycres.2009.03.005	2009
Gene deletion of cytosolic ATP: citrate lyase leads to altered organic acid production in Aspergillus niger Meijer, Susan Lisette ; Nielsen, Michael Lynge ; Olsson, Lisbeth ; Nielsen, Jens in journal: Journal of Industrial Microbiology and Biotechnology (ISSN: 1367-5435) (DOI: http://dx.doi.org/10.1007/s10295-009-0607-y), vol: 36, pages: 1275-1280, 2009 Type: Journal article - Journal article DOI: 10.1007/s10295-009-0607-y	2009
Heterologous production of non-ribosomal peptide LLD-ACV in Saccharomyces cerevisiae Siewers, Verena ; Chen, Xiao ; Huang, Le ; Zhang, Jie ; Nielsen, Jens in journal: Metabolic Engineering (ISSN: 1096-7176) (DOI: http://dx.doi.org/10.1016/j.ymben.2009.08.002), vol: 11, pages: 391-397, 2009 Type: Journal article - Journal article DOI: 10.1016/j.ymben.2009.08.002	2009
Marksvampes mykotoksiner i majs - nok ikke skyld i sundhedsproblemer hos kvæg Sørensen, Jens Laurids ; Storm, Ida Marie Lindhardt Drejer ; Andersen, Birgitte ; Thrane, Ulf in journal: Ny Kvægforskning, vol: 4, 2009 Type: Journal article - Journal article	2009
Nutritional Systems Biology: Definitions and Approaches Panagiotou, Gianni ; Nielsen, Jens in journal: Annual Review of Nutrition (ISSN: 0199-9885) (DOI: http://dx.doi.org/10.1146/annurev-nutr-080508-141138), vol: 29, pages: 329-339, 2009 Type: Journal article - Journal article DOI: 10.1146/annurev-nutr-080508-141138	2009
Proteome analysis of Aspergillus niger: Lactate added in starch-containing medium can increase production of the mycotoxin fumonisin B2 by modifying acetyl-CoA metabolism Sørensen, Louise Marie ; Lametsch, Rene ; Andersen, Mikael Rørdam ; Nielsen, Per Væggemose ; Frisvad, Jens Christian in journal: B M C Microbiology (ISSN: 1471-2180) (DOI: http://dx.doi.org/10.1186/1471-2180-9-255), vol: 9, issue: 255, 2009 Type: Journal article - Journal article DOI: 10.1186/1471-2180-9-255	2009
Role of teh Rad52 Amino-terminal DNA Binding Activity in DNA Strand Capture in Homologous Recombination Shi, Idina ; Hallwyl, Swee Chuang Lim ; Seong, Changhyun ; Mortensen, Uffe Hasbro ; Rothstein, Rodney ; Sung, Patrick in journal: Journal of Biological Chemistry (ISSN: 0021-9258) (DOI: http://dx.doi.org/10.1074/jbc.M109.057752), vol: 284, issue: 48, pages: 33275-33284, 2009 Type: Journal article - Journal article DOI: 10.1074/jbc.M109.057752	2009
Uncovering transcriptional regulation of glycerol metabolism in Aspergilli through genome-wide gene expression data anlysis Salazar, Margarita Pena ; Vongsangnak, Wanwipa ; Panagiotou, Gianni ; Andersen, Mikael Rørdam ; Nielsen, Jens in journal: Molecular Genetics and Genomics (ISSN: 1617-4615) (DOI: http://dx.doi.org/10.1007/s00438-009-0486-y), vol: 282, issue: 6, pages: 571-586, 2009 Type: Journal article - Journal article DOI: 10.1007/s00438-009-0486-y	2009
Svampenaturstoffer som grundskelet for nye typer af lægemidler mod kræft Rønnest, Mads Holger ; Worm-Leonard, K. ; Clausen, M.H. ; Larsen, Thomas Ostenfeld in journal: Dansk Kemi (ISSN: 0011-6335), vol: 90, issue: 6/7, pages: 6-8, 2009 Type: Journal article - Journal article	2009
Metabolic Engineering of Filamentous Fungi Andersen, Mikael Rørdam ; Kildegaard, Kanchana Rueksomtawin ; Hofmann, Gerald ; Nielsen, Jens part of: Metabolic Pathway Engineering Handbook (ISBN: 14-39-80296-3), pages: 1-30, 2009, C R C Press LLC, Boca Raton, Florida Type: Book chapter - Book chapter	2009
On-line estimation of biomass, glucose and ethanol in Saccharomyces cerevisiae cultivations using in-situ multi-wavelength fluorescence and software sensors Ödman, Peter ; Lindvald Johansen, C. ; Olsson, Lisbeth ; Gernaey, Krist ; Eliasson Lantz, Anna in journal: Journal of Biotechnology (ISSN: 0168-1656) (DOI: http://dx.doi.org/10.1016/j.jbiotec.2009.08.018), vol: 144, issue: 2, pages: 102-112, 2009 Type: Journal article - Journal article DOI: 10.1016/j.jbiotec.2009.08.018	2009
Development of continuous culture microbioreactors Schäpper, Daniel ; Fernandes, Rita L ; Gernaey, Krist ; Eliasson Lantz, Anna ; Stocks, Stuart ; Szita, Nicolas Type: Sound/Visual production (digital) - Sound/Visual production (digital) Presented at: 10th International Conference on Microreaction Technology, New Orleans, LA	2009
Photostability of Natural Orange-Red and Yellow Fungal Pigments in Liquid Food Model Systems Mapari, Sameer Shamsuddin ; Meyer, Anne S. ; Thrane, Ulf in journal: Journal of Agricultural and Food Chemistry (ISSN: 0021-8561) (DOI: http://dx.doi.org/10.1021/jf900113q), vol: 57, issue: 14, pages: 6253-6261, 2009 Type: Journal article - Journal article DOI: 10.1021/jf900113q	2009
Rad52 Mortensen, Uffe Hasbro ; Lisby, Michael ; Rothstein, Rodney in journal: Current Biology (ISSN: 0960-9822) (DOI: http://dx.doi.org/10.1016/j.cub.2009.06.001), vol: 19, issue: 16, pages: R676-R677, 2009 Type: Journal article - Journal article DOI: 10.1016/j.cub.2009.06.001	2009
Interpretation of electrospray spectra - Getting the molecular mass correct each time - learning from a library of 800 microbial metabolites Nielsen, Kristian Fog Type: Conference abstract for conference - Conference abstract for conference Presented at: Executive Seminars in Analytical Chemistry, Copenhagen	2009
Aspergillus niger and fumonisins Nielsen, Kristian Fog ; Mogensen, Jesper Mølgaard ; Larsen, Thomas Ostenfeld ; Frisvad, Jens Christian Type: Conference abstract for conference - Conference abstract for conference Presented at: Nordforsk mould and mycotoxin seminar, Uppsala, Sweden	2009
Biodiversity and accurate identification of mycotoxin producing fungi Frisvad, Jens Christian part of: ISM2009, 2009, Type: Conference abstract in proceedings - Conference abstract in proceedings Presented at: ISM2009 : Worldside Mycotoxin Recuction in Food and Feed Chains, Tulln, Austria	2009
Bridging the gap between Transcriptome and Metabolome by using Genome-scale Metabolic Models Zelezniak, Aleksej ; Patil, Kiran Raosaheb Type: Poster - Poster Presented at: SYSTEMS BIOLOGY AS A DRIVER FOR INDUSTRIAL BIOTECHNOLOGY	2009
Chemical challenges from the Roseobacter strains Nielsen, Kristian Fog ; Månsson, Maria Type: Conference abstract for conference - Conference abstract for conference Presented at: The Danish Society of Analytical Chemistry : Two years with Galathea 3 in Denmark	2009
Development of high-throughput methods for heterologous expression in fungi Hansen, Bjarne Gram ; Nielsen, Jakob Blæsbjerg ; Nielsen, Michael Lynge ; Patil, Kiran Raosaheb ; Mortensen, Uffe Hasbro Type: Poster - Poster Presented at: 6th International Aspergillus Meeting, Asilomar, California, USA	2009
Directed Evolution towards Increased Isoprenoid Production in Saccharomyces cerevisiae Carlsen, Simon ; Nielsen, Michael Lynge ; Kielland-Brandt, Morten ; Eliasson Lantz, Anna Type: Poster - Poster Presented at: Systems Biology as a driver for Industrial Biotechnology, Istanbul, Turkey	2009
Display of wasp venom allergens on the cell surface of yeast Borodina, Irina ; Jensen, Bettina ; Søndergaard, Ib ; Larsen, Jørgen Nedergaard ; Poulsen, Lars K. Type: Poster - Poster Presented at: Allergy School on Hymenoptera venom allergy, Ancona, Italy	2009
Dissection of polyketide biosynthesis pathway in Aspergillus nidulans Nielsen, Michael Lynge ; Brogaard, Katrine Husted ; Rank, Christian ; Nielsen, Jakob Blæsbjerg ; Larsen, Thomas Ostenfeld ; Frisvad, Jens Christian ; Mortensen, Uffe Hasbro Type: Poster - Poster Presented at: 25th Fungal Genetics Conference, Asilomar, CA	2009
E-SPE : Explorative Solid-Phase-Extraction for Accelerated Natural Product Discovery and Purification Månsson, Maria ; Phipps, Richard Kerry ; Gram, Lone ; Larsen, Thomas Ostenfeld ; Nielsen, Kristian Fog Type: Poster - Poster Presented at: Nordic Natural Products Conference, Reijkavik, Island	2009
Establishing Saccharomyces cerevisiae as platform for isoprenoid production Carlsen, Simon ; Nielsen, Michael Lynge ; Kielland-Brandt, Morten ; Eliasson Lantz, Anna Type: Poster - Poster Presented at: Symposium for Biotechnological Research, Lyngby	2009
Extrolites, ecology and evolution: Frisvad, Jens Christian part of: International Conference on Fungal Evolution and Charles Darwin: (ISBN: 978-616-120-000-8), 2009, Type: Conference abstract in proceedings - Conference abstract in proceedings Presented at: International Conference on Fungal Evolution and Charles Darwin: : From Morphology to Molecules	2009
Heterologous expression of hydrophobins RodA and RodB from Aspergillus fumigatus in host Pichia pastoris Pedersen, Mona Højgaard ; Borodina, Irina ; Frisvad, Jens Christian ; Søndergaard, Ib Type: Poster - Poster Presented at: International Conference on Environmental, Industrial and Applied Microbiology : BioMicroWorld 2009, Lissabon, Portugal	2009
Heterologous Production of Polyketides in Fungi Mølgaard, Louise ; Hansen, Bjarne Gram ; Mortensen, Uffe Hasbro ; Patil, Kiran Raosaheb Type: Poster - Poster Presented at: Systems Biology as a driver for Industrial Biotechnology, Istanbul, Turkey	2009
Improving Aspergillus niger as a production host through manipulation of pH responding transcription factors. Poulsen, Lars ; Bruno, K.S. ; Thykær, Jette ; Baker, S.E. ; Eliasson Lantz, Anna Type: Poster - Poster Presented at: Recent Advances in Fermentation Technology VIII, San Diego, California, USA	2009
In silico evolution leads to green chemical factory Brochado, Ana Rita ; Matos, Claudia ; Mortensen, Uffe Hasbro ; Patil, Kiran Raosaheb Type: Poster - Poster Presented at: SYSTEMS BIOLOGY AS A DRIVER FOR INDUSTRIAL BIOTECHNOLOGY, Istanbul, Turkey	2009
LC-HRMS dereplication of mycotoxins and microbial metabolites based on 800 reference standards Nielsen, Kristian Fog ; Larsen, Thomas Ostenfeld ; Frisvad, Jens Christian part of: ISM Conference 2009, 2009, Type: Conference abstract in proceedings - Conference abstract in proceedings Presented at: ISM Conference 2009 : Worldwide Mycotoxin Reduction in Food and Feed Chains, Tulln, Austria	2009
Regulation of secondary metabolism in Streptomyces coelicolor A3(2) Sohoni, Sujata Vijay ; Mijakovic, Ivan ; Eliasson Lantz, Anna Type: Poster - Poster Presented at: Biology of Streptomycetes, Münster, Germany	2009
Sugar preferences of transporter-like sensors Snf3 and Rgt2 in Saccharomyces cerevisiae Karhumaa, Kaisa ; Wu, Boqian ; Kielland-Brandt, Morten Type: Poster - Poster Presented at: International Conference Yeast Genetics Molecular Biology, Manchester, UK	2009
Transcription factors as targets for improving Aspergillus niger as cell factory Poulsen, Lars ; Bruno, K.S. ; Thykær, Jette ; Baker, S.E. ; Eliasson Lantz, Anna Type: Poster - Poster Presented at: SYSTEMS BIOLOGY AS A DRIVER FOR INDUSTRIAL BIOTECHNOLOGY, Istanbul, Turkey	2009
Disruption of the NADPH-dependent glutamate dehydrogenase affects the morphology of two industrial strains of Penicillium chrysogenum Thykær, Jette ; Kildegaard, Kanchana Rueksomtawin ; Noorman, H. ; Nielsen, Jens in journal: Journal of Biotechnology (ISSN: 0168-1656) (DOI: http://dx.doi.org/10.1016/j.jbiotec.2008.12.016), vol: 139, issue: 4, pages: 280-282, 2009 Type: Journal article - Journal article DOI: 10.1016/j.jbiotec.2008.12.016	2009
A polyphasic approach to the taxonomy of the Alternaria infectoria species-group Andersen, Birgitte ; Sørensen, Jens Laurids ; Nielsen, Kristian Fog ; Gerrits van den Ende, Bert ; de Hoog, Sybren in journal: Fungal Genetics and Biology (ISSN: 1087-1845) (DOI: http://dx.doi.org/10.1016/j.fgb.2009.05.005), vol: 46, issue: 9, pages: 642-656, 2009 Type: Journal article - Journal article DOI: 10.1016/j.fgb.2009.05.005	2009
Review of secondary metabolites and mycotoxins from the Aspergillus niger group Nielsen, Kristian Fog ; Mogensen, Jesper Mølgaard ; Månsson, Maria ; Larsen, Thomas Ostenfeld ; Frisvad, Jens Christian in journal: Analytical and Bioanalytical Chemistry (ISSN: 1618-2642) (DOI: http://dx.doi.org/10.1007/s00216-009-3081-5), vol: 395, issue: 5, pages: 1225-1242, 2009 Type: Journal article - Journal article DOI: 10.1007/s00216-009-3081-5	2009
Metabolomics of Aspergillus fumigatus Frisvad, Jens Christian ; Rank, Christian ; Nielsen, Kristian Fog ; Larsen, Thomas Ostenfeld in journal: Medical Mycology (ISSN: 1369-3786) (DOI: http://dx.doi.org/10.1080/13693780802307720), vol: 47, issue: 1, pages: S53-S71, 2009 Type: Journal article - Journal article DOI: 10.1080/13693780802307720	2009
Synthetic Promoter Library for modulation of actinorhodin production in Streptomyces coelicolorA3(2) Sohoni, Sujata Vijay ; Mijakovic, Ivan ; Eliasson Lantz, Anna Type: Poster - Poster Presented at: 15th International symposium on the biology of actinomycetes, Shanghai, China	2009
Pigment production in response to deficiency in DNA repair Nielsen, Jakob Blæsbjerg ; Rank, Christian ; Mapari, Sameer Shamsuddin ; Nielsen, Michael Lynge ; Larsen, Thomas Ostenfeld ; Frisvad, Jens Christian ; Mortensen, Uffe Hasbro Type: Poster - Poster Presented at: 25th Fungal Genetics Conference, Asilomar, CA	2009
Engineering the spatial organization of metabolic pathways Buron, Line Due ; Maury, Jerome ; Bach, Lars Stougaard ; Nielsen, Jens ; Mortensen, Uffe Hasbro Type: Poster - Poster Presented at: Biochemical Engineering XVI, Burlington, Vermont, USA	2009
Intracellular glucose concentration affects glucose sensing by transporter-like sensor Snf3 in yeast Karhumaa, Kaisa ; Wu, B. ; Kielland-Brandt, Morten Type: Poster - Poster Presented at: 3rd Congress of European Microbiologists, Goteborg	2009
Physiological characterization of brewer's yeast in high-gravity beer fermentations with glucose or maltose syrups as adjuncts Piddocke, Maya Petrova ; kreisz, Stefan ; Heldt-Hansen, Hans Peter ; Nielsen, Kristian Fog ; Olsson, Lisbeth in journal: Applied Microbiology and Biotechnology (ISSN: 0175-7598) (DOI: http://dx.doi.org/10.1007/s00253-009-1930-y), vol: 84, issue: 3, pages: 453-464, 2009 Type: Journal article - Journal article DOI: 10.1007/s00253-009-1930-y	2009
Monitoring and modeling temperature variations inside silage stacks using novel wireless sensor networks Green, O. ; Nadimi, E.S. ; Blanes-Vidal, V. ; Jorgensen, R.N. ; Storm, Ida Marie Lindhardt Drejer ; Sorensen, C.G. in journal: Computers and Electronics in Agriculture (ISSN: 0168-1699) (DOI: http://dx.doi.org/10.1016/j.compag.2009.07.021), vol: 69, issue: 2, pages: 149-157, 2009 Type: Journal article - Journal article DOI: 10.1016/j.compag.2009.07.021	2009
Pseudomonas aeruginosa recognizes and responds aggressively to the presence of polymorphonuclear leukocytes Alhede, Morten ; Bjarnsholt, T. ; Jensen, P.O. ; Phipps, Richard Kerry ; Moser, C. ; Christophersen, L. ; Christensen, L.D. ; van Gennip, M. ; Parsek, M. ; Hoiby, N. ; Rasmussen, T.B. ; Givskov, M. in journal: Microbiology (ISSN: 1350-0872) (DOI: http://dx.doi.org/10.1099/mic.0.031443-0), vol: 155, issue: Part 11, pages: 3500-3508, 2009 Type: Journal article - Journal article DOI: 10.1099/mic.0.031443-0	2009
Giftige fumonisiner fra Aspergillus niger Mogensen, Jesper Mølgaard ; Mogensen, Jesper ; Frisvad, Jens Christian ; Thrane, Ulf ; Larsen, Thomas Ostenfeld ; Nielsen, Kristian Fog in journal: Dansk Kemi (ISSN: 0011-6335), vol: 90, issue: 1, pages: 25-27, 2009 Type: Journal article - Journal article	2009
Good Modeling Practice for PAT Applications: Propagation of Input Uncertainty and Sensitivity Analysis Sin, Gürkan ; Gernaey, Krist ; Eliasson Lantz, Anna in journal: Biotechnology Progress (ISSN: 8756-7938) (DOI: http://dx.doi.org/10.1002/btpr.166), vol: 25, issue: 4, pages: 1043-1053, 2009 Type: Journal article - Journal article DOI: 10.1002/btpr.166	2009
Cellulolytic enzyme production and response to pH and temperature by Trichoderma reesei Lehmann, Linda Olkjær ; Olsson, Lisbeth ; Stocks, Stuart M. ; Jørgensen, Henrik S. ; Hobley, Timothy John Type: Poster - Poster Presented at: 31st Symposium on Biotechnology for Fuels and Chemicals, San Francisco, CA	2009
A case-base study of residential IEQ related risk factors and parental reports of asthma and allergy among 500 Danish children – IECH Toftum, Jørn ; Clausen, Geo ; Callesen, Michael ; Bekö, Gabriel ; Weschler, Charles J. ; Langer, Sarka ; Andersen, Birgitte ; Høst, Arne part of: Proceedings of Healthy Buildings, pages: 617, 2009, Type: Article in proceedings - Article in proceedings Presented at: 9th International Healthy Building Conference and Exhibition 2009, Syracuse, NY	2009
PRODUCTION OF MONASCUS-LIKE AZAPHILONE PIGMENT Mapari, Sameer Shamsuddin ; Thrane, Ulf ; Meyer, Anne S. ; Frisvad, Jens Christian Type: Patent - Patent	2009
Systemic analysis of the response of Aspergillus niger to ambient pH Andersen, Mikael Rørdam ; Lehmann, Linda Olkjær ; Nielsen, Jens in journal: Genome Biology (ISSN: 1465-6906) (DOI: http://dx.doi.org/10.1186/gb-2009-10-5-r47), vol: 10, issue: 5, pages: R47, 2009 Type: Journal article - Journal article DOI: 10.1186/gb-2009-10-5-r47	2009
Global transcriptional response of Saccharomyces cerevisiae to the deletion of SDH3 Cimini, Donatella ; Patil, Kiran Raosaheb ; Schiraldi, Chiara ; Nielsen, Jens in journal: BMC Systems Biology (ISSN: 1752-0509) (DOI: http://dx.doi.org/10.1186/1752-0509-3-17), vol: 3, pages: 17, 2009 Type: Journal article - Journal article DOI: 10.1186/1752-0509-3-17	2009
Reconstruction and logical modeling of glucose repression signaling pathways in Saccharomyces cerevisiae Christensen, Tobias S. ; Soberano de Oliveira, Ana Paula ; Nielsen, Jens in journal: BMC Systems Biology (ISSN: 1752-0509) (DOI: http://dx.doi.org/10.1186/1752-0509-3-7), vol: 3, pages: 7, 2009 Type: Journal article - Journal article DOI: 10.1186/1752-0509-3-7	2009
Identification of potentially safe promising fungal cell factories for the production of polyketide natural food colorants using chemotaxonomic rationale Mapari, Sameer Shamsuddin ; Meyer, Anne S. ; Thrane, Ulf ; Frisvad, Jens Christian in journal: Microbial Cell Factories (ISSN: 1475-2859) (DOI: http://dx.doi.org/10.1186/1475-2859-8-24), vol: 8, pages: 24, 2009 Type: Journal article - Journal article DOI: 10.1186/1475-2859-8-24	2009
Effect of temperature and water activity on the production of fumonisins by Aspergillus niger and different Fusarium species Mogensen, Jesper Mølgaard ; Nielsen, Kristian Fog ; Samson, Robert A. ; Frisvad, Jens Christian ; Thrane, Ulf in journal: B M C Microbiology (ISSN: 1471-2180) (DOI: http://dx.doi.org/10.1186/1471-2180-9-281), vol: 9, pages: 281, 2009 Type: Journal article - Journal article DOI: 10.1186/1471-2180-9-281	2009
Reconstruction of the yeast Snf1 kinase regulatory network reveals its role as a global energy regulator Usaite, Renata ; Jewett, Michael Christopher ; Soberano de Oliveira, Ana Paula ; Yates III, John R. ; Olsson, Lisbeth ; Nielsen, Jens in journal: Molecular Systems Biology (ISSN: 1744-4292) (DOI: http://dx.doi.org/10.1038/msb.2009.67), vol: 5, pages: 319, 2009 Type: Journal article - Journal article DOI: 10.1038/msb.2009.67	2009
Mycotoxins: The important species that produce them Frisvad, Jens Christian part of: Acta Microbiologica et Immunologica Hungarica, 2009, Akadémiai Kiadó, Type: Conference abstract in proceedings - Conference abstract in proceedings Presented at: 2nd Central European Forum for Microbiology, Keszthely DOI: 10.1556/AMicr.56.2009.Suppl.1	2009
Preharvest fungi and their mycotoxins in Danish maize Sørensen, Jens Laurids ; Thrane, Ulf ; Andersen, Birgitte Type: Ph.d. thesis - Ph.d. thesis	2009
Post-harvest Fungal Spoilage of Maize Silage Storm, Ida Marie Lindhardt Drejer ; Thrane, Ulf ; Smedsgaard, Jørn Type: Ph.d. thesis - Ph.d. thesis	2009
Filamentous fungi on meat products, their ability to produce mycotoxins and a proteome approach to study mycotoxin production Sørensen, Louise Marie ; Frisvad, Jens Christian ; Nielsen, Per Væggemose ; Lametsch, Rene ; Koch, Anette Granly ; Jacobsen, Tomas Type: Ph.d. thesis - Ph.d. thesis	2009
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