Publikationer 2006

Spektroskopisk analyse

Rank, Christian ; Eriksen, Katrine ; Gotfredsen, Charlotte Held

part of: Kemiske Horisonter (ISBN: 87-91233-07-0), pages: 140-154, 2006, Svendborg

Type: Book chapter - Book chapter

Structure of Bacillus halmapalus alpha-amylase crystallized with and without the substrate analogue acarbose and maltose

Lyhne-Iversen, Louise ; Hobley, Timothy John ; Kaasgaard, Svend G. ; Harris, Pernille

in journal: Acta Crystallographica. Section F: Structural Biology and Crystallization Communications Online (ISSN: 1744-3091) (DOI: http://dx.doi.org/10.1107/S174430910603096X), vol: 62, pages: 849-854, 2006

Type: Journal article - Journal article

DOI: 10.1107/S174430910603096X

Transcription analysis using high-density micro-arrays of Aspergillus nidulans wild-type and creA mutant during growth on glucose or ethanol

Mogensen, Jesper ; Nielsen, Henrik Bjørn ; Hofmann, Gerald ; Nielsen, Jens

in journal: FUNGAL GENETICS AND BIOLOGY, vol: 43, pages: 593-603, 2006

Type: Journal article - Journal article

Online monitoring and modeling of Streptomyces coelicolor cultivations

Ödman, Peter ; Eliasson Lantz, Anna ; Gernaey, Krist ; Olsson, Lisbeth

Type: Poster - Poster

Presented at: 1st Meeting on Process Analytical Technologies for graduate students and young researchers

Integration of metabolome data with metabolic networks reveals reporter reactions

Çakir, Tunahan ; Patil, Kiran Raosaheb ; Önsan, Zeynep Ilsen ; Ülgen, Kutlu Özergin ; Kirdar, Betül ; Nielsen, Jens

in journal: Molecular Systems Biology (ISSN: 1744-4292) (DOI: http://dx.doi.org/10.1038/msb4100085), vol: 2, 2006

Type: Journal article - Journal article

DOI: 10.1038/msb4100085

Incorporating Protein Biosynthesis into the Saccharomyces cerevisiae Genome-scale Metabolic Model

Olivares Hernandez, Roberto

Type: Poster - Poster

Presented at: Danish Conference on Molecular Biology and Biotechnology : Systems Biology, Vejle,Denmark

Controlling PEGylation of enzymes

Maury, Trine Lütken ; Hobley, Timothy John ; Villadsen, John

Type: Poster - Poster

Presented at: 6th International Conference on Scientific and Clinical Applications of Magnetic Carriers, Krems

Evaluating the performance of expanded bed adsorption columns

Hobley, Timothy John

Type: Sound/Visual production (digital) - Sound/Visual production (digital)

Presented at: Recovery of Biological Products XII, Litchfield, Arizona, USA

Flexible microbioreactors using functionalised, magnetic beads

Heebøll-Nielsen, Anders ; Dornaus, Kristina ; Hobley, Timothy John ; Kruhne, Ulrich

Type: Sound/Visual production (digital) - Sound/Visual production (digital)

Presented at: 6th European Symposium on Biochemical Engineering Science, Salzburg

Exploring the Potential of Detailed Food Quality Control by Electronic Nose Analysis

Karlshøj, Kristian

Type: Paper - Paper

Presented at: Exploring the Potential of Detailed Food Quality Control by Electronic Nose Analysis, United States Department of Agriculture, San Joaquin Valley Agricultural Sciences Center, Parlier, CA, USA

Systems biology of the yeast Saccharomyces cerevisiae

Nielsen, Jens

Type: Paper - Paper

Presented at: The Norwegian Biochemical Society : Contact Meeting, Storefjell, Norway

Systems Biology of Industrial Microbes

Nielsen, Jens

Type: Paper - Paper

Presented at: American Society for Microbiology 106th General Meeting, Orlando, USA

Yeast as a versatile cell factory

Nielsen, Jens

Type: Paper - Paper

Presented at: Genetics of Industrial Microorganisms, Prague, Czech Republic

Metabolism of Aspergillus: Lessons from Genomics

Nielsen, Jens

Type: Paper - Paper

Presented at: Society for Industrial Microbiology Annual Meeting, Baltimore, USA

The orotate transporter oroP from Lactococcus lactis is required for orotate uptake and can be used both as a food-grade selection and counter-selection marker

Defoor, Els Marie Celine ; Martinussen, Jan

Type: Conference abstract for conference - Conference abstract for conference

Presented at: International Conference on Arginine and Pyrimidines, Lund, Sweden

Exploring Biosynthetic Control in Lipid Metabolism

Jewett, Michael Christopher ; Nookaew, Intawat ; Pizarro, Francisco A. ; Hellgren, Lars ; Agosin, Eduardo ; Nielsen, Jens

Type: Conference abstract for conference - Conference abstract for conference

Presented at: American Institute of Chemical Engineering : Annual Meeting

Food-borne fungi in fruit and cereals and their production of mycotoxins

Andersen, Birgitte ; Thrane, Ulf

part of: Advances in Food Mycology (ISBN: 0-387-28385-4), pages: 137-152, 2006, Springer-verlag Berlin, Berlin

Type: Article in proceedings - Article in proceedings

Presented at: 5th International Workshop on Food Mycology, Samso

DOI: 10.1007/0-387-28391-9_8

Active packaging of cheese with allyl isothiocynata, an alternative to modified atmosphere packaging

Winther, M. ; Nielsen, Per Væggemose

in journal: Journal of Food Protection, vol: 69, pages: 2430-2435, 2006

Type: Journal article - Journal article

Identification and characterization of centrosomal cluster-inhibitors as novel anti-cancer agents

Rebacz, B. ; Loffler, H. ; Cetin, C. ; Pepperkok, R. ; Ho, A.D. ; Larsen, Thomas Ostenfeld ; Kramer, A.

in journal: EJC Supplements (ISSN: 1359-6349), vol: 4, issue: 6, pages: 43-44, 2006

Type: Conference abstract in journal - Conference abstract in journal

Identification of an Abscisic Acid Gene Cluster in the Grey Mold Botrytis cinerea

Siewers, Verena ; Kekkelink, Leonie ; Smedsgaard, Jørn ; Tudzynski, Paul

in journal: Applied and Environmental Microbiology (ISSN: 0099-2240), vol: 72, issue: 7, pages: 4619-4626, 2006

Type: Journal article - Journal article

Production of cellulases by Penicillium brasilianum IBT 20888 - Effect of substrate on hydrolytic performance

Olsson, Lisbeth ; Jørgensen, Henning

in journal: Enzyme and Microbial Technology (ISSN: 01410229), vol: 38, issue: 3-4, pages: 381-390, 2006

Type: Journal article - Journal article

Separate and Simultaneous enzymatic hydrolysis and fermentation of wheat hemicellulose with recombinant xylose utilizing Saccharomyces cerevisiae

Olsson, Lisbeth ; Sørensen, H. R. ; Dam, B. P ; Krogh, Kristian Bertel Rømer ; Meyer, Anne S.

in journal: Applied Biochemistry and Biotechnology (ISSN: 0273-2289) (DOI: http://dx.doi.org/10.1385/ABAB:129:1:117), vol: 129, issue: 1-3, pages: 117-129, 2006

Type: Journal article - Journal article

DOI: 10.1385/ABAB:129:1:117

Four Psychrotolerant species with high chemical diversity consistently producingcycloaspeptide A, Penicillium jamesonlandnese sp. nov., P. Ribeum sp. nov, P. Soppii and P. lanosum

Frisvad, Jens Christian ; Larsen, Thomas Ostenfeld ; Larsen, Thomas Ostenfeld ; Seifert, K. A. ; Louis-Seize, G ; Lyhne, Ellen Kirstine ; Jarvis, Bruce ; Fettinger, J. C. ; Overy, David Patrick

in journal: International Journal of Systematic and Evolutionary Microbiology (DOI: http://dx.doi.org/10.1099/ijs.0.64160-0), vol: 56, pages: 1427-1437, 2006

Type: Journal article - Journal article

DOI: 10.1099/ijs.0.64160-0

Bacterial single-stranded DNA-binding proteins are phosphorylated on tyrosine.

Mijakovic, Ivan ; Petranovic, Dina ; Macek, B ; Cepo, T ; Mann, M. ; Davies, Jonathan Conrad ; Jensen, P. R. ; Vujaklija, D

in journal: Nucleic Acids Res., vol: 34, issue: 5, pages: 1588-96, 2006

Type: Journal article - Journal article

Robust multi-scale clustering of large DNA microarray datasets with the consensus algorithm.

Grotkjær, Thomas ; Winther, Ole ; Regenberg, Birgitte ; Nielsen, Jens ; Hansen, Lars Kai

in journal: Bioinformatics (ISSN: 1367-4803), vol: 22, issue: 1, pages: 58-67, 2006

Type: Journal article - Journal article

In silico aided metabolic engineering of Saccharomyces cerevisiae for improved bioethanol production.

Bro, C ; Regenberg, Birgitte ; Forster, Jorchen ; Nielsen, Jens

in journal: Metabolic Engineering, vol: 8, pages: 102-111, 2006

Type: Journal article - Journal article

New Neosartorya species isolated from soil in Korea

Hong, S. B. ; Cho, H.S. ; Shin, H. D. ; Frisvad, Jens Christian ; Samson, R.A

in journal: International Journal of Systematic and Evolutionary Microbiology, vol: 56, pages: 439-442, 2006

Type: Journal article - Journal article

Host-derived media used as a predictor for low abundant, in planta metabolites production by necrotrophic fungi.

Overy, David Patrick ; Smedsgaard, Jørn ; Frisvad, Jens Christian ; Phipps, Richard Kerry ; Thrane, Ulf

in journal: Journal of Applied Microbiology (DOI: http://dx.doi.org/10.1111/j.1365-2672.2006.03037.x), vol: 101, issue: 6, pages: 1292-1300, 2006

Type: Journal article - Journal article

DOI: 10.1111/j.1365-2672.2006.03037.x

Characterization of Emetic Bacillus weihenstephanensis, a New Cereulide-Producing Bacterium

Thorsen, Line ; Munk Hansen, Bjarne ; Nielsen, Kristian Fog ; Bohsen Hendriksen, Niels ; Phipps, Richard Kerry ; Bjørn Budde, Birgitte

in journal: Applied and Environmental Microbiology (ISSN: 0099-2240) (DOI: http://dx.doi.org/10.1128/AEM.00170-06), vol: 72, issue: 7, pages: 5118-5121, 2006

Type: Journal article - Journal article

DOI: 10.1128/AEM.00170-06

Global Transcriptional and Physiological Responses of Saccharomyces cerevisiae to Ammonium, L-Alanine, or L-Glutamine Limitation

Usaite, Renata ; Patil, Kiran Raosaheb ; Grotkjær, Thomas ; Nielsen, Jens ; Regenberg, Birgitte

in journal: Applied and Environmental Microbiology (ISSN: 0099-2240) (DOI: http://dx.doi.org/10.1128/AEM.00548-06), vol: 72, issue: 9, pages: 6194-6203, 2006

Type: Journal article - Journal article

DOI: 10.1128/AEM.00548-06

Old and new concepts of species differentiation in Aspergillus

Samson, R. A. ; Hong, S.-B. ; Frisvad, Jens Christian

in journal: Medical Mycology, vol: 44, pages: 134-148, 2006

Type: Journal article - Journal article

Real-time PCR quantification of the AM-toxin gene and HPLC quantification of toxigenic metabolites from Alternaria species from apples

Andersen, Birgitte ; Smedsgaard, Jørn ; Jørring, I. ; Skouboe, P. ; Pedersen, L.H.

in journal: INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY (ISSN: 0168-1605), vol: 111, pages: 105-111, 2006

Type: Journal article - Journal article

Mycotoxins and Other Secondary Metabolites Produced in vitro by Penicillium paneum Frisvad and Penicillium roqueforti Thom Isolated from Baled Grass Silage in Ireland

O'Brien, Martin ; Nielsen, Kristian Fog ; O'Kiely, Padraig ; Forristal, Patrick D. ; Fuller, Hubert ; Frisvad, Jens Christian

in journal: Journal of Agricultural and Food Chemistry (ISSN: 0021-8561) (DOI: http://dx.doi.org/10.1021/jf0621018), vol: 54, issue: 24, pages: 9268-9276, 2006

Type: Journal article - Journal article

DOI: 10.1021/jf0621018

Genetics of Lactococci

Gaudu, P. ; Yamamoto, Y. ; Jensen, Peter Ruhdal ; Hammer, Karin ; Gruss, A.

part of: Gram- positive Pathogens, pages: 356-368, 2006,

Type: Book chapter - Book chapter

Advances in Food Mycology

Hocking, A. D. ; Pitt, J.I. ; Samson, R.A. ; Thrane, Ulf

Type: Book - Book

Enhancing Metabolic Engineering through Systems Biology

Soberano de Oliveira, Ana Paula

Type: Paper - Paper

Presented at: Bioinformatics Workshop of the PhD Symposium in Computer Engineering, University of Minho, Portugal

Revealing Transcriptional Programs in Yeast by using Reporter Features Algorithm

Soberano de Oliveira, Ana Paula ; Patil, Kiran Raosaheb ; Nielsen, Jens

Type: Poster - Poster

Presented at: International Specialized Symposium on Yeast, Helsinki, Finland

High gravity fermentations for low carbohydrate beer production

Piddocke, Maya Petrova ; Sørensen, Thomas Lykke ; Olsson, Lisbeth

Type: Poster - Poster

Presented at: International Specialised Symposium on Yeast, Hanasaari, Espoo, Finland

Heterologous expression of compactin gene cluster in Aspergillus nidulans

Kildegaard, Kanchana Rueksomtawin

Type: Poster - Poster

Presented at: Natural Products Discovery and Production: New Challenges, New Opportunities Conference, Santa Fe, New Mexico, USA

Genome-wide mutation library in Aspergillus nidulans

Nielsen, Jakob Blæsbjerg ; Nielsen, Michael Lynge ; Mortensen, Uffe Hasbro

Type: Poster - Poster

Presented at: 8th European Conference on Fungal Genetics, Vienna

PCR-based gene targeting in Aspergillus niger

Andersen, Mikael Rørdam

Type: Poster - Poster

Presented at: 8th European Conference on Fungal Genetics, Vienna

Genome annotation and metabolic network construction of Aspergillus oryzae

Vongsangnak, Wanwipa

Type: Poster - Poster

Presented at: 7th International Conference on Systems Biology, Yokohama

Secondary metabolome – the bridge between phenetics and phylogenetics in Fusarium

Thrane, Ulf

Type: Paper - Paper

Presented at: International Congress on Mycology, Cairns, Australia

Fungal pigments as food colorants

Thrane, Ulf ; Mapari, Sameer Shamsuddin

Type: Paper - Paper

Presented at: Fungi and Mycotoxins in Food and Indoor Air Symposium, International Commission on Food Mycology, Cairns

Secondary metabolites and genomics

Thrane, Ulf

Type: Paper - Paper

Presented at: International Fusarium Genomics Workshop, University of Natural Resources and Applied Life Sciences, Vienna, Austria

Analysis for moniliformin in Danish maize

Sørensen, Jens Laurids ; Nielsen, Kristian Fog ; Thrane, Ulf

Type: Poster - Poster

Presented at: 9th European Fusarium Seminar, Wageningen

Chemotaxonomy of large-spored Alternaria

Andersen, Birgitte

Type: Paper - Paper

Presented at: Conference of the European Foundation for Plant Pathology, KVL, Copenhagen, Denmark

Applying metabolic flux analysis in strain improvement

Eliasson Lantz, Anna

Type: Paper - Paper

Presented at: Natural Products Discovery and Production, Santa Fe, New Mexico, USA

Amycolatopsis balhimycina, a potential cell factory for glycopeptide production?

Thykær, Jette ; Eliasson Lantz, Anna ; Vemuri, Goutham ; Vongsangnak, Wanwipa ; Forster, Jochen ; Nielsen, Jens

Type: Poster - Poster

Presented at: VAAM Workshop “Biology of Bacteria Producing Natural Products”, Tübingen, Germany

of stress on morphology and by product formation during Aspergillus fermentation

Olsson, Lisbeth

Type: Paper - Paper

Presented at: Society of Industrial Microbiology, Baltimore Marriott Waterfront Baltimore, USA