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Publications 2003

Andersen, B., Nielsen, K. F, Thrane, U., Szaro, T., Taylor, J.W., Jarvis, B. B.. (2003), Molecular and phenotypic description of Stachybotrys chlorohalonata sp. nov and two chemotypes of Stachybotrys chartarum found in water-damaged buildings. Mycologia 95:1225-1236.

 

Berg, J.-E., Stengård Hansen, L., Vagen Jensen K.-M. and Nielsen, P.V. (2003), The effects of anoxic treatment on the larvae of six species of dermestids (Coeloptera). Journal of Applied Entomology 127:317-321.

 

Bro, C., Regenberg, B., Lagniel, G., Labarre, J., Montero-Lomeli, M., Nielsen, J. (2003), Transcriptional, proteomics and metabolic response to lithium in galactose-grown yeast cells. Journal of Biological Chemistry 278:32141-32149.

 

Christiansen, T., Michaelsen, S., Wümpelmann, M., Nielsen, J. (2003), Production of Savinase and population viability of Bacillus clausii during high cell density fed-batch cultivations. Biotechnology and Bioengineering 83:344-352.

 

David, H.,  Åkesson, M., Nielsen, J. (2003), Reconstruction of the central carbon metabolism of Aspergillus niger. European Journal of Biochemistry 270:4243-4253.

 

Dynesen, J., Nielsen, J. (2003), Surface hydrophobicity of Aspergillus nidulans conidiophores and its role in pellet formation. Biotechnology Progress 19:1049-1052.

 

Dynesen, J., Nielsen, J. (2003), Branching is coordinated with mitosis in growing hyphae of Aspergillus nidulans. Fungal Genetics and Biology 40:15-24.

 

Famili, I., Förster, J., Nielsen, J., Palsson, B. (2003), Saccharomyces cerevisiae phenotypes can be predicted using constraint based analysis of a genome-scale reconscructed metabolic network. Proceedings of the National Academy of Sciences of the USA 100:13134-13139.

 

Ferré, H., Ruffet, E., Blicher, T., Sylvester-Hvid, C., Nielsen, L.L.B., Hobley, T.J., Thomas, O.R.T., Buus, S. (2003), Purification of correctly pre-oxidized MHC class I molecules under denaturing conditions: a novel strategy exploiting disulfide assisted protein refolding. Protein Science 12:551-559.

 

Förster, J., Famili, I., Fu, P., Palsson, B. Ø., Nielsen, J. (2003), Genome-scale reconstruction of the Saccharomyces cerevisiae metabolic network. Genome Research 13:244-253.

 

Förster, J., Famili, I.,  Palsson, B. Ø., Nielsen, J. (2003), Large-scale Evaluation of in silico Gene Deletions in Saccharomyces cerevisiae. Omics: A Journal of Integrative Biology 7:193-202.

 

Gunde-Cimerman, N., Sonjak, S., Zalar, P., Frisvad, J.C., Diderichsen, B., Plemenitas, A. (2003), Extremophilic fungi in arctic ice: A relation between adaptation to low temperature and water activity. Physics and Chemistry of the Earth 28:1273-1278.

 

Gunnarsson, N, Bruheim, P., Nielsen, J. (2003), Production of the glycopeptide antibiotic A40926 by Nonomuria sp. ATCC 39727: influence of medium composition in batch fermentation. Journal of Industrial Microbiology and Biotechnology 30:150-156.

 

Haahr, A.-M., Madsen, H., Smedsgaard, J., Bredie, W., Stahnke, L.H.,  Refsgaard, H.H.F. (2003), Flavor release measurement by atmospheric pressure chemical ionization ion trap mass spectrometry, construction of interface and mathematical modeling of release profiles. Analytical Chemistry 75:655-662.

 

Hansen, E.H., Albertsen, L, Schäfer, T., Johansen, C., Frisvad, J.C., Molin, S., Gram, L. (2003), Curvularia haloperoxidase: Antimicrobial activity and potential application as a surface desinfectant. Applied and Environmental Microbiology 69:4611-4617.

 

Hansen, M.E., Lund, F. and Carstensen, J.M. (2003), Visual clone identification of Penicillium commune isolates. Journal of Microbiological Methods 52:221-229.

 

Hofmann, G., McIntyre,. M., Nielsen, J. (2003), Fungal genomics beyond Saccharomyces cerevisiae? Current Opinion in Biotechnology 14:226-231.

 

Jørgensen, H., Eriksson, T., Börjeson, J., Tjerneld, F., Olsson, L. (2003), Purification and

characterization of five cellulases and one xylanase from Penicillium brasilianum  IBT

20888. Enzyme and Microbial Technology 32:851-861.

 

Jørgensen, H., Kutter, J. P., Olsson, L. (2003), Separation and quantification of

cellulases and hemicellulases by capillary electrophoresis. Analytical Biochemistry 317:85-93.

 

Kildesø, J., Würtz, H., Nielsen, K.F., Kruse P., Wilkins, K., Thrane, U. Gravesen S., Nielsen, P.A., Schneider T. (2003), Determination of fungal spore release from wet building materials. Indoor Air 13:148-155.

 

Klinke, H. B., Olsson, L., Thomsen A. B., and Ahring, B. K. (2003), Potential inhibitors

from wet oxidation of wheat straw and their effect on ethanol production in

Saccharomyces cerevisiae. Biotechnology and Bioengineering 81:738-74.

 

Kosiak, B., Torp, M., Skjerve E., Thrane U. (2003), The prevalence and distribution of Fusarium species in Norwegian cereals: a survey. Acta Agriculturae Scandinavica B 53:168-176.

 

Larsen, T.O., Perry, N.B., Andersen B. (2003), Infectopyrone, a potential mycotoxin from Alternaria infectoria. Tetrahedron Letters 44:4511-4513.

 

Lei, F., Olsson, L., Jørgensen, S. B. (2003), Experimental investigations of multiple steady states in aerobic continuous cultivations of Saccharomyces cerevisiae. Biotechnology and Bioengineering  82:766-777

 

Lisby, M,  Antunez de Mayolo, A., Mortensen, U. H., Rothstein, R. (2003), Cell cycle-regulated centers of DNA double-strand break repair. Cell Cycle 2:479-83.

 

Lisby, M., Mortensen, U. H., Rothstein, R. (2003), Co-localization of multiple DNA double-strand breaks at a single Rad52 repair centre. Nature Cell Biology 5: 572-577.

 

Lund, F. and Frisvad, J.C. (2003), Penicillium verrucosum in cereals indicates production of ochratoxin A. Journal of Applied Microbiology 95: 1117-1123.

 

Lund, F., Nielsen, A.B., Skouboe P. (2003), Distribution of Penicillium commune isolates in cheese dairies mapped using secondary metabolite profiles, morphotypes, RAPD and AFLP fingerprinting. Food Microbiology 20: 725-734.

 

Lübbehüsen, T. L., Nielsen, J., McIntyre, M. (2003), Characterization of the Mucor circinelloides life cycle by on-line image analysis. Journal of Applied Microbiology 95:1152-1160.

 

Lübbehüsen, T. L., Nielsen, J., McIntyre, M. (2003), Morphology and physiology of the dimorphic fungus Mucor circinelloides (syn. M. racemosus) during anaerobic growth. Mycological Research 107:223-230.

 

Müller, C., Hansen, K., Szabo, P., Nielsen, J. (2003), Effect of chitin synthesis on mycelial morphology and culture viscosity in Aspergillus oryzae. Biotechnology and Bioengineering 81:525-534.

 

Nielsen, J. (2003), It is all about metabolic fluxes. Journal of Bacteriology 185:7031-7035.

 

Nielsen, K.F. (2003), Mycotoxin production by indoor moulds. Fungal Genetics and Biology 39:103-117.

 

Nielsen, K.F. and Smedsgaard, J. (2003), Fungal metabolite screening: database of 474 mycvotoxins and fungal metaboloites for dereplication by standardised liquid chromatography-UV-mass spectrometry methodology. Journal of Chromatography A 1002: 111-136.

 

Nordkvist, M., Jensen, M. B. S, Villadsen, J. (2003), Glucose Metabolism in Lactococcus lactis MG1363 under Different Conditions of Aeration: Requirement of Acetate To Sustain Growth under Microaerobic Conditions. Applied and Environmental Microbiology 69:3462-3468.

 

Nordkvist, M., Grotkjær, T., Hummer, J. S., Villadsen, J. (2003), Applying Rotary Jet Heads for Mixing and Mass Transfer in a Forced Recirculation Tank Reactor System. Chemical Engineering Science 58:3877-3890.

 

Olsson, L., Christensen, T. M. I. E., Hansen, K. P., Palmqvist E. A. (2003), Influence of the

carbon source on production of cellulases, hemicellulases and pectinases by Trichoderma

 reseei Rut C-30. Enzyme and Microbial Technology 33:612-619.

 

Overy, D.P. and Frisvad, J.C. (2003), New Penicillium species associated with bulbs and root vegetables. Systematic and Applied Microbiology 26:631-639.

 

Overy, D., Seifert, K., Savard, M.E., Frisvad, J.C. (2003), Spoilage fungi and their mycotoxins in commercially marketed chestnuts. International Journal of Food Microbiology 88:69-77.

 

Prathumpai, W, Gabelgaard, J. B., Wanchanthuek, P., Vondervoort, P. J. I. van den, Groot, M. J. L. de, McIntyre, M,  Nielsen, J. (2003), Metabolic control analysis of xylose catabolism in Aspergillus. Biotechnology Progress 19:1136-1141.

 

Rahbæk, L., Sperry, S., Frisvad, J.C., Larsen, T.O. (2003), PC-2, LL-P888gamma and some novel analogue alfa-pyrones from Penicillium nordicum, P. verrrucosum and P. olsonii. Biochemical Systematics and Ecology 31:313-317.

 

Rasmussen, L.H., Kroghsbo, S., Frisvad, J.C., Hansen, H.C.B. (2003), Occurrence of the carcinogenic bracken constituent ptaquiloside in fronds, topsoils and organic soil layers in Denmark. Chemosphere 51:117-127.

 

Reeslev, M., Miler, M., Nielsen, K.F. (2003), Quantifying mold biomass on gypsum board: Comparison of ergosterol and beta-N-acetylhexosamidase as mold biomass parameters. Applied and Environmental Microbiology 69:3996-3998.

 

Robin, J., Bonneau, S., Schipper, D., Noorman H., Nielsen, J. (2003), Influence of the adipate and dissolved oxygen concentrations on the b-lactams production during continuous cultivations of a Penicillium chrysogenum strain expressing the expandase gene from Streptomyces clavuligerus. Metabolic Engineering 5:42-48.

 

Robin, J, Bruheim, P., Nielsen, M. L., Noorman, H., Nielsen, J. (2003), Continuous cultivations of Penicillium chrysogenum strain expressing the expandase gene from Streptomyces clavuligerus: Kinetics of adipoyl-7-aminodeacetoxycephalosporanic acid and by-product formation. Biotechnology and Bioengineering 83:361-368.

 

Robin, J., Lettier, G., McIntyre, M., Noorman, H., Nielsen, J. (2003), Continuous cultivations of Penicillium chrysogenum strain expressing the expandase gene from Streptomyces clavuligerus: Growth yields and morphological characterisation. Biotechnology and Bioengineering 83:353-360.

 

Roca, C., Nielsen, J., Olsson, L. (2003), Metabolic engineering of ammonium assimilation in xylose fermenting Saccharomyces cerevisiae improves ethanol production. Applied and Environmental Microbiology 69:4732-4736.

 

Roca, C., and Olsson, L. (2003), Increasing ethanol productivity during xylose fermentation by cell recycling of recombinant Saccharomyces cerevisiae. Applied Microbiology and Biotechnology 60:560-563.

 

Santos, M. M. dos, Gombert, A. K, Christensen, B., Olsson, L., Nielsen, J. (2003), Identification of in vivo enzyme activities in the co-metabolism of glucose and acetate by Saccharomyces cerevisiae using 13C-labeled substrates. Eukaryotic Cell 2:599-608.

 

Santos, M. M. dos, Thygesen, G., Kötter, P.,  Olsson, L., Nielsen, J. (2003), Aerobic physiology of redox-engineered Saccharomyces cerevisiae strains modified in the ammonium assimilation for increased NADPH availability. FEMS Yeast Research 4:59-68.

 

Seifert, K.A., Aoki, T., Baayen RP, Brayford, D., Burgess, L.W., Chulze, S., Gams, W., Geiser, D., de Gruyter, J., Leslie, J.F., Logrieco, A., Marasas, W.F.O., Nirenberg, H.I., O Donnell, K., Rheeder, J., Samuels, G.J., Summerell, B.A., Thrane U., Waalwijk C. (2003), The name Fusarium moniliforme should no longer be used. Mycological Research 107:643-644.

 

Suhr, K.I. and Nielsen, P.V. (2003), Antifungal activity of essential oils evaluated by two different application techniques against rye bread spoilage fungi. Journal of Applied Microbiology 94:665-674.

 

Thygesen, A., Thomsen, A. B., Schmidt, A. S., Jørgensen, H., Ahring, B. K., Olsson, L. (2003), Production of cellulases and hemicellulases by filamentous fungi on wet oxidised wheat straw. Enzyme and Microbial Technology 32:606-615.

 

Thykær, J., Nielsen, J. (2003), Metabolic engineering of b-lactam production. Metabolic Engineering 5:56-69.

 

Villas-Boas, S. G., Delicado, D. G.,  Åkesson, M., Nielsen, J. (2003), Simultaneous analysis of amino and nonamino organic acids as methyl chloroformate derivatives using gas chromatography-mass spectrometry. Analytical Biochemistry 322:134-138.

 

Wilkins, C. K., Nielsen, K.F., Din, S.U. (2003), Patterns of volatile metabolites and non-volatile trichothecenes produced by isolates of Stachybotrys, Fusarium, Trichoderma, Trichothecium and Memnoniella. Environmental Science and Pollution Report 10:162-166.

 

 

Book Contributions

Bro, C.,  Regenberg, B., Nielsen, J. (2003), Yeast Functional Genomics and Metabolic Engineering; Past, present and future. In: de Winde, H. editor. Functional Genetics of Industrial Yeast. Heidelberg: Springer. pp 331-360.

 

Eliasson, A., Passoth, V., Hahn-Hägerdal, B. (2003), Cyanide-insensitive respiration. In: Wolf, K., Breunig, K.D., Barth, G. editors. Non-conventional yeasts in genetics, biochemistry and biotechnology. Heidelberg: Springer.  Vol XXVII, Chapter 38:239-246.

 

Gombert, A., Nielsen, J. (2003), Quantification of metabolic fluxes. In: Encyclopaedia of Life Sciences. London: Nature Publishing Group.

 

Nielsen, K.F., Smedsgaard, J., Larsen, T.O., Lund, F., Thrane, U., Frisvad, J.C. (2003), Chemical identification of fungi - metabolite profiling and metabolomics. In: Arora, D.K. editor. Fungal Biotechnology in Agricultural, Food and Environmental Applications. New York: Marcel Dekker. pp. 19-35.

 

Olsen, M., Johnsson, N., Magan, N., Banks, J., Fanelli, C., Rizzo, A., Haikara, A., Dobson, A., Frisvad J., Holmes, S, Ollku, J., Persson, S.-J., Borjeson, T. (2003), Prevention strategies for ochratoxin in grain.: In: Bryson R.J., Kennedy, R., Magan N., and Scudamore, K.A. editors. Mycotoxins in food production systems . Aspects of Applied Biology, Association of Applied Biologists. Warwick: Wellesbourne.  pp. 68:29-33.

 

Santos, M. M. Dos, Åkesson, M., Nielsen, J. (2003), Metabolic Flux Analysis in the post genomics area. In: Eds. Kholodenko, B., Westerhoff, H. editors. Metabolic Engineering in the Post Genomic Era. Norfolk: Horizon Scientific Press. pp. 89-105.

 

Trihaas, J., van den Tempel, T., Nielsen, P.V., (2003), Monitoring of Danish Blue Cheese Ripening by Means of Electronic Nose System, Trained Sensory Panel and GC-MS. In: J.L. Le Quéré, J.L., Etiévant, P.X. editors. Flavour Research at the Dawn of the Twenty-first Century (Proceedings of the 10th Weurman Flavour Research Symposium) Paris: Lavoisier. pp. 729-732.

   

 

Other Publications 

Dalsgaard, P. and Faber, J. H. (2003), Fordelingskromatografi: fra skilletragt til fast centrifugal partition kromatografi. Dansk Kemi 84:28-30.

 

Ferré, H., Ruffet, E., Nielsen, L.L.B., Hobley, T.J., Thomas, O.R.T., Buus, S. (2003), Continuous protein refolding combined with EBA capture: A novel aggregation resistant process. Downstream, EBA’02 special edition. Amersham Biosciences AB.

 

Hansen, E. de Place, Nielsen, P. A., and Nielsen, K. F. (2003), Fugtforhold i ydervægs- og tagkonstruktioner. Danvak Magasinet 1:18-21.

 

Hobley, T.J. (2003), En ny generation af bioreaktor. Dansk Kemi 84:10-11.

 

Hobley, T.J., Heebøll-Nielsen, A., Thomas O.R.T. (2003), Magnetic fishing: Et attraktivt prospekt for bioprocesser. Dansk Kemi 84:12-14.

 

Nordkvist, M., Grotkjær, T., Lazar, J.Å., Hummer, J.S., Villadsen, J. (2003), Hiv røreværket op, sænk jetten ned. Dansk Kemi 84 (6/7):18-21.

 

Møller, K., and Olsson, L. (2003), Heterolog proteinproduktion med gæren Saccharomyces kluyveri,  Dansk kemi 84 (5):35-37.

 

Nielsen, P. V.  (2003), Hvad er det der giver skimmelosten sin gode smag? Mælkeritidende 2003 (17).

 

Thykær, J., Nielsen, J. (2003), Metabolsk Netværks Analyse, Dansk Kemi 84 (5): 24-27

Last updated 02.02.2009
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